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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
4
DNase-seq
3
single cell RNA-seq
2
Hi-C
1
RRBS
Assay category
6
DNA binding
4
DNA accessibility
3
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
6
control
3
RNA binding protein
3
histone
histone modification
3
narrow histone mark
3
transcription factor
Date released
6
July, 2019
6
November, 2017
4
June, 2019
Available data
15
bigWig
13
bam
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
6
bed bed3+
6
fastq
3
tsv
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
Organism
16
Homo sapiens
Biosample type
81
tissue
16
primary cell
Organ
188
epithelium
136
pancreas
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
16
AMP
Genome assembly (visualization)
16
hg19
10
GRCh38
Lab
16
AMP-T2D consortium
lab.title!
Klaus Kaestner, Upenn
organ_slims!
connective tissue
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
16 results
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ChIP-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
cerebellar granule cell
2
Purkinje cell
1
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