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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
5
DNase-seq
3
Hi-C
3
single cell RNA-seq
1
RRBS
Assay category
6
DNA binding
5
DNA accessibility
3
3D chromatin structure
3
Transcription
1
DNA methylation
Target of assay
6
control
3
RNA binding protein
histone
3
histone modification
3
narrow histone mark
3
transcription factor
Date released
7
July, 2019
6
November, 2017
5
June, 2019
Available data
17
bigWig
14
bam
8
bed bed3+
8
bed broadPeak
8
bed narrowPeak
8
bigBed broadPeak
8
bigBed narrowPeak
6
fastq
3
hdf5
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
18
Homo sapiens
Biosample type
81
tissue
18
primary cell
Organ
188
epithelium
136
pancreas
31
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
18
AMP
Genome assembly (visualization)
18
hg19
11
GRCh38
Lab
18
AMP-T2D consortium
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
histone
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
DNase-seq
Hi-C
single cell RNA-seq
RRBS
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
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