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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
12
DNase-seq
6
total RNA-seq
3
RRBS
Assay category
15
DNA binding
12
DNA accessibility
6
Transcription
3
DNA methylation
Target of assay
10
histone
10
histone modification
5
broad histone mark
5
narrow histone mark
3
control
2
RNA binding protein
2
transcription factor
Date released
13
June, 2019
11
October, 2019
7
July, 2019
5
May, 2019
Available data
31
bam
28
bigWig
22
bed narrowPeak
16
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
36
Homo sapiens
Biosample type
299
tissue
36
primary cell
19
cell line
Organ
406
epithelium
346
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
36
AMP
Genome assembly (visualization)
28
GRCh38
25
hg19
Lab
36
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
Xin Sun, UCSD
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
primary cell
epithelial cell of proximal tubule
10
1
1
1
kidney epithelial cell
5
1
1
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
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