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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
ChIP-seq
166
total RNA-seq
129
ATAC-seq
113
single cell RNA-seq
56
snATAC-seq
31
DNase-seq
17
pCHi-C
10
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
281
Transcription
217
DNA accessibility
204
DNA binding
11
DNA methylation
7
3D chromatin structure
Target of assay
176
histone
176
histone modification
93
broad histone mark
83
narrow histone mark
22
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
55
June, 2019
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
34
October, 2019
31
July, 2019
18
August, 2017
11
July, 2018
10
April, 2018
9
November, 2017
8
January, 2021
6
November, 2020
5
December, 2019
May, 2019
4
August, 2021
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
417
bigWig
410
bam
223
bed narrowPeak
162
tsv
151
fastq
100
tagAlign
83
bigBed narrowPeak
73
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
737
Homo sapiens
Biosample type
2159
tissue
737
primary cell
570
cell line
391
in vitro differentiated cells
10
stem cell
Organ
401
epithelium
pancreas
39
connective tissue
37
vasculature
31
blood vessel
31
kidney
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
360
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
439
hg19
340
GRCh38
Lab
325
AMP-T2D consortium
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
46
inconsistent ontology term
28
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
lab.title!
Maike Sander, UCSD
month_released!
May, 2019
organ_slims!
pancreas
BIOSAMPLE
ASSAY
737 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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