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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
ChIP-seq
244
total RNA-seq
197
ATAC-seq
175
single cell RNA-seq
41
WGBS
29
snATAC-seq
27
DNase-seq
16
pCHi-C
10
RRBS
9
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
421
Transcription
253
DNA accessibility
245
DNA binding
52
DNA methylation
9
3D chromatin structure
Target of assay
216
histone
216
histone modification
110
broad histone mark
106
narrow histone mark
32
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
51
June, 2019
February, 2021
48
July, 2018
43
April, 2018
October, 2019
31
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
578
bigWig
565
bam
359
fastq
263
bed narrowPeak
261
tsv
153
zippedFastqFolder
100
tagAlign
86
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
34
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
996
Homo sapiens
Biosample type
1877
tissue
996
primary cell
311
in vitro differentiated cells
187
cell line
10
stem cell
Organ
362
epithelium
340
pancreas
35
connective tissue
23
kidney
18
brain
14
musculature of body
14
vasculature
13
liver
12
heart
9
blood vessel
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
512
AMP
279
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
589
hg19
503
GRCh38
Lab
477
AMP-T2D consortium
279
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Xin Sun, UCSD
month_released!
February, 2021
October, 2019
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
996 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
25
1
Langerhans cell
73
21
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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