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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
DNase-seq
6
ChIP-seq
4
total RNA-seq
3
RRBS
Assay category
10
DNA accessibility
6
DNA binding
4
Transcription
3
DNA methylation
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
control
2
narrow histone mark
transcription factor
Date released
12
June, 2019
October, 2019
7
July, 2019
4
May, 2019
Available data
20
bam
18
bigWig
14
bed narrowPeak
14
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
4
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
23
Homo sapiens
Biosample type
294
tissue
23
primary cell
4
cell line
Organ
368
epithelium
346
pancreas
38
connective tissue
23
kidney
18
brain
14
musculature of body
14
vasculature
13
liver
12
heart
9
blood vessel
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
23
AMP
Genome assembly (visualization)
18
GRCh38
15
hg19
Lab
23
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
lab.title!
Xin Sun, UCSD
month_released!
October, 2019
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
23 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
primary cell
kidney epithelial cell
1
4
1
1
epithelial cell of proximal tubule
1
2
1
1
renal cortical epithelial cell
1
1
1
glomerular endothelial cell
1
1
glomerular visceral epithelial cell
2
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