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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
13
total RNA-seq
10
RRBS
4
Hi-C
3
ATAC-seq
3
single cell RNA-seq
2
DNase-seq
2
small RNA-seq
Assay category
53
DNA binding
18
Transcription
10
DNA methylation
5
DNA accessibility
4
3D chromatin structure
Target of assay
38
histone
38
histone modification
22
narrow histone mark
16
broad histone mark
16
control
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
76
bam
68
bigWig
58
fastq
33
bed narrowPeak
19
bigBed narrowPeak
18
tsv
14
bed broadPeak
14
bigBed broadPeak
12
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
90
Homo sapiens
Biosample type
361
tissue
90
primary cell
68
in vitro differentiated cells
Organ
42
epithelium
41
pancreas
8
connective tissue
7
brain
7
kidney
5
heart
5
vasculature
4
blood vessel
3
musculature of body
2
adipose tissue
2
artery
2
liver
1
eye
1
pericardium
Project
90
AMP
Genome assembly (visualization)
78
hg19
60
GRCh38
Lab
90
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
90 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
Hi-C
ATAC-seq
single cell RNA-seq
DNase-seq
small RNA-seq
primary cell
skeletal muscle myoblast
15
1
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
cerebellar granule cell
2
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