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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
149
ATAC-seq
102
single cell RNA-seq
51
total RNA-seq
29
DNase-seq
9
RRBS
5
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
179
DNA accessibility
158
DNA binding
155
Transcription
10
DNA methylation
5
3D chromatin structure
Target of assay
120
histone
120
histone modification
63
narrow histone mark
57
broad histone mark
31
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
59
August, 2017
53
June, 2019
48
July, 2018
43
April, 2018
33
October, 2019
29
July, 2019
20
May, 2021
12
February, 2023
9
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
November, 2018
Available data
414
bam
375
bigWig
240
fastq
174
bed narrowPeak
162
tsv
107
bigBed narrowPeak
47
bed broadPeak
47
bigBed broadPeak
28
bed bed3+
12
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
3
hdf5
2
csv
2
hic
1
bedpe bed3+
1
tar
Organism
507
Homo sapiens
Biosample type
1560
tissue
507
primary cell
299
in vitro differentiated cells
151
cell line
8
stem cell
Organ
254
epithelium
194
pancreas
37
vasculature
36
kidney
35
connective tissue
31
blood vessel
22
vein
21
brain
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
507
AMP
Genome assembly (visualization)
394
hg19
332
GRCh38
Lab
507
AMP-T2D consortium
279
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
48
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
February, 2021
organ_slims!
liver
BIOSAMPLE
ASSAY
507 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic beta cell
13
7
12
10
pancreatic alpha cell
13
6
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
12
4
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
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