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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ATAC-seq
176
total RNA-seq
104
single cell RNA-seq
56
snATAC-seq
47
WGBS
39
ChIP-seq
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
282
Transcription
272
DNA accessibility
57
DNA methylation
39
DNA binding
10
3D chromatin structure
Target of assay
histone
119
histone modification
63
narrow histone mark
56
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
88
February, 2023
May, 2021
September, 2020
48
February, 2021
48
July, 2018
April, 2018
41
September, 2018
36
June, 2019
31
July, 2019
21
August, 2017
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
298
bam
280
bigWig
257
fastq
175
tsv
134
zippedFastqFolder
66
bed narrowPeak
62
bigBed narrowPeak
33
bed broadPeak
33
bigBed broadPeak
32
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
661
Homo sapiens
Biosample type
2104
tissue
661
primary cell
604
cell line
171
in vitro differentiated cells
8
stem cell
Organ
288
epithelium
236
pancreas
28
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
342
AMP
265
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
285
hg19
227
GRCh38
Lab
342
AMP-T2D consortium
265
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
36
inconsistent ontology term
31
audit script error
month_released!
April, 2018
May, 2021
September, 2020
target.investigated_as!
histone
BIOSAMPLE
ASSAY
661 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
33
37
9
31
6
1
Langerhans cell
45
48
pancreatic beta cell
22
20
9
16
6
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
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