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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
71
ATAC-seq
70
ChIP-seq
47
WGBS
41
single cell RNA-seq
3
Hi-C
Assay category
122
Transcription
71
DNA accessibility
70
DNA binding
47
DNA methylation
3
3D chromatin structure
Target of assay
58
histone
58
histone modification
31
narrow histone mark
27
broad histone mark
12
control
Date released
80
May, 2022
72
September, 2018
41
August, 2017
37
February, 2023
37
July, 2018
April, 2018
19
September, 2020
7
August, 2020
6
February, 2021
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
230
fastq
161
bam
159
bigWig
80
zippedFastqFolder
75
tsv
68
bed narrowPeak
22
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
313
Homo sapiens
Biosample type
499
tissue
313
primary cell
92
cell line
3
in vitro differentiated cells
Organ
373
epithelium
313
pancreas
37
connective tissue
37
vasculature
36
kidney
31
blood vessel
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
161
AMP
152
HPAP
Genome assembly (visualization)
159
GRCh38
152
hg19
Lab
161
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
April, 2018
organ_slims!
vein
BIOSAMPLE
ASSAY
313 results
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total RNA-seq
ATAC-seq
ChIP-seq
WGBS
single cell RNA-seq
Hi-C
primary cell
pancreatic alpha cell
52
35
13
31
9
1
pancreatic beta cell
21
23
13
16
9
1
pancreatic acinar cell
4
9
8
6
1
pancreatic ductal cell
4
4
13
4
pancreatic endocrine cell
23
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