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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
total RNA-seq
214
ChIP-seq
189
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
9
Hi-C
8
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
431
Transcription
273
DNA accessibility
214
DNA binding
56
DNA methylation
9
3D chromatin structure
Target of assay
196
histone
196
histone modification
105
broad histone mark
91
narrow histone mark
21
control
RNA binding protein
8
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
August, 2017
49
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
29
July, 2019
8
January, 2021
August, 2020
6
November, 2017
6
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
541
bigWig
531
bam
341
fastq
265
tsv
248
bed narrowPeak
153
zippedFastqFolder
84
tagAlign
80
bigBed narrowPeak
31
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
1000
Homo sapiens
Biosample type
2162
tissue
1000
primary cell
306
in vitro differentiated cells
250
cell line
10
stem cell
Organ
365
epithelium
298
pancreas
38
connective tissue
35
vasculature
34
kidney
30
blood vessel
22
vein
18
brain
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
478
AMP
317
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
560
hg19
468
GRCh38
Lab
443
AMP-T2D consortium
317
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
50
inconsistent ontology term
31
audit script error
Audit category:
32
missing controlled_by
month_released!
August, 2017
August, 2020
organ_slims!
liver
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
1000 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
52
29
12
31
1
pancreatic beta cell
21
20
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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