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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
212
ChIP-seq
197
ATAC-seq
139
single cell RNA-seq
56
snATAC-seq
47
WGBS
26
DNase-seq
17
pCHi-C
10
Hi-C
8
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
384
Transcription
280
DNA accessibility
212
DNA binding
56
DNA methylation
10
3D chromatin structure
Target of assay
194
histone
194
histone modification
106
broad histone mark
88
narrow histone mark
17
control
4
RNA binding protein
4
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
August, 2017
59
September, 2020
48
February, 2021
July, 2018
47
June, 2019
43
April, 2018
34
October, 2019
26
July, 2019
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
500
bigWig
482
bam
294
fastq
250
bed narrowPeak
218
tsv
153
zippedFastqFolder
88
tagAlign
78
bigBed narrowPeak
34
bed bed3+
26
bed broadPeak
26
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
959
Homo sapiens
Biosample type
1978
tissue
959
primary cell
325
in vitro differentiated cells
281
cell line
10
stem cell
Organ
338
epithelium
268
pancreas
37
connective tissue
36
kidney
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
heart
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
430
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
514
hg19
430
GRCh38
Lab
395
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
42
inconsistent ontology term
31
audit script error
Audit category:
32
missing controlled_by
month_released!
August, 2017
July, 2018
November, 2017
organ_slims!
heart
BIOSAMPLE
ASSAY
959 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
52
34
5
31
1
pancreatic beta cell
21
22
3
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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