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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
3
single cell RNA-seq
Assay category
112
DNA binding
3
Transcription
Target of assay
199
histone
199
histone modification
106
broad histone mark
93
narrow histone mark
22
control
8
RNA binding protein
8
transcription factor
Date released
55
May, 2021
August, 2017
19
June, 2019
15
September, 2018
12
October, 2019
6
November, 2017
3
August, 2021
3
July, 2019
2
May, 2019
Available data
100
bam
99
bigWig
90
bed narrowPeak
43
tagAlign
21
fastq
20
bigBed narrowPeak
3
bed broadPeak
3
bigBed broadPeak
3
tsv
2
bed bed3+
Organism
115
Homo sapiens
Biosample type
432
tissue
115
primary cell
102
cell line
68
in vitro differentiated cells
2
stem cell
Organ
36
epithelium
15
pancreas
12
vasculature
10
blood vessel
9
brain
8
kidney
8
vein
7
connective tissue
6
musculature of body
4
heart
3
liver
2
eye
Project
75
AMP
40
T1D
Genome assembly (visualization)
99
hg19
83
GRCh38
Lab
62
AMP-T2D consortium
53
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
15
missing controlled_by
month_released!
August, 2017
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
115 results
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ChIP-seq
single cell RNA-seq
primary cell
monocyte
41
CD8-positive, alpha-beta T cell
13
endothelial cell of umbilical vein
8
pancreatic ductal cell
7
epithelial cell of proximal tubule
6
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