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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
250
ChIP-seq
245
total RNA-seq
154
ATAC-seq
154
single cell RNA-seq
35
snATAC-seq
27
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
6
WGBS
2
small RNA-seq
1
DNAme array
Assay category
401
Transcription
250
DNA binding
216
DNA accessibility
17
DNA methylation
6
3D chromatin structure
Target of assay
221
histone
221
histone modification
113
broad histone mark
108
narrow histone mark
32
control
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
49
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
27
July, 2019
13
October, 2019
8
January, 2021
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
May, 2019
4
November, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
573
bam
573
bigWig
395
fastq
269
bed narrowPeak
268
tsv
100
tagAlign
83
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
31
bed bed3+
19
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
907
Homo sapiens
Biosample type
2553
tissue
907
primary cell
531
cell line
383
in vitro differentiated cells
10
stem cell
Organ
314
epithelium
259
pancreas
38
connective tissue
35
vasculature
34
kidney
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
519
AMP
204
T1D
183
HPAP
1
ITG
Genome assembly (visualization)
594
hg19
503
GRCh38
Lab
484
AMP-T2D consortium
239
Kyle Gaulton, UCSD
183
Klaus Kaestner, Upenn
1
ITG
Audit category:
51
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
August, 2020
May, 2022
organ_slims!
blood vessel
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
907 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
WGBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
8
12
1
6
Langerhans cell
52
27
pancreatic beta cell
13
21
8
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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