Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
239
ChIP-seq
188
ATAC-seq
184
single cell RNA-seq
171
total RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
9
RRBS
7
DNase-seq
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
357
Transcription
252
DNA accessibility
239
DNA binding
57
DNA methylation
7
3D chromatin structure
Target of assay
215
histone
215
histone modification
114
broad histone mark
101
narrow histone mark
21
control
3
RNA binding protein
3
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
24
July, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
551
bigWig
542
bam
324
fastq
255
tsv
242
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
56
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
10
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
1
tar
Organism
929
Homo sapiens
Biosample type
2232
tissue
929
primary cell
656
cell line
335
in vitro differentiated cells
7
stem cell
Organ
349
epithelium
309
pancreas
33
vasculature
29
blood vessel
23
kidney
22
connective tissue
22
vein
brain
12
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
476
AMP
248
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
572
hg19
480
GRCh38
Lab
441
AMP-T2D consortium
248
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
23
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
December, 2017
February, 2023
June, 2019
organ_slims!
brain
BIOSAMPLE
ASSAY
929 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
DNase-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
54
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
35
12
25
31
1
pancreatic beta cell
13
23
12
11
16
1
CD8-positive, alpha-beta T cell
33
2
4
1
+ See 77 more…
See all biosamples
Download