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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ChIP-seq
183
single cell RNA-seq
174
total RNA-seq
86
ATAC-seq
56
snATAC-seq
47
WGBS
26
DNase-seq
17
pCHi-C
9
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
359
Transcription
238
DNA binding
169
DNA accessibility
57
DNA methylation
7
3D chromatin structure
Target of assay
202
histone
202
histone modification
105
broad histone mark
97
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
May, 2020
134
May, 2022
88
February, 2023
September, 2018
59
August, 2017
59
September, 2020
50
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
24
July, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
431
bigWig
430
bam
327
fastq
238
bed narrowPeak
196
tsv
153
zippedFastqFolder
100
tagAlign
84
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
1
bed bed3
1
csv
1
hdf5
1
tar
Organism
847
Homo sapiens
Biosample type
2271
tissue
847
primary cell
661
cell line
351
in vitro differentiated cells
7
stem cell
Organ
345
epithelium
274
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
363
AMP
324
HPAP
159
T1D
1
ITG
Genome assembly (visualization)
445
hg19
405
GRCh38
Lab
328
AMP-T2D consortium
324
Klaus Kaestner, Upenn
194
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
31
audit script error
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
December, 2017
May, 2020
September, 2018
organ_slims!
brain
BIOSAMPLE
ASSAY
847 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
52
13
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
12
42
32
31
1
pancreatic beta cell
13
12
11
19
16
1
exocrine cell
39
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