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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
74
single cell RNA-seq
71
ATAC-seq
58
ChIP-seq
47
WGBS
3
Hi-C
Assay category
155
Transcription
71
DNA accessibility
58
DNA binding
47
DNA methylation
3
3D chromatin structure
Target of assay
58
histone
58
histone modification
31
narrow histone mark
27
broad histone mark
control
Date released
80
May, 2022
72
September, 2018
37
February, 2023
37
July, 2018
33
April, 2018
29
August, 2017
19
September, 2020
7
August, 2020
6
February, 2021
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
246
fastq
192
bigWig
182
bam
108
tsv
80
zippedFastqFolder
68
bed narrowPeak
22
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
334
Homo sapiens
Biosample type
476
tissue
334
primary cell
81
cell line
2
in vitro differentiated cells
Organ
385
epithelium
334
pancreas
36
connective tissue
33
kidney
33
vasculature
28
blood vessel
20
vein
15
brain
13
liver
12
musculature of body
11
heart
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
182
AMP
152
HPAP
Genome assembly (visualization)
192
GRCh38
185
hg19
Lab
182
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
December, 2017
organ_slims!
blood
target.investigated_as!
control
BIOSAMPLE
ASSAY
334 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
52
12
35
7
31
1
pancreatic beta cell
21
12
23
7
16
1
pancreatic acinar cell
4
12
9
8
1
pancreatic ductal cell
4
10
4
13
pancreatic endocrine cell
23
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