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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
88
total RNA-seq
72
ATAC-seq
70
single cell RNA-seq
41
WGBS
18
DNase-seq
7
Hi-C
6
RRBS
1
FAIRE-seq
Assay category
158
Transcription
92
DNA binding
91
DNA accessibility
47
DNA methylation
7
3D chromatin structure
Target of assay
66
histone
66
histone modification
35
narrow histone mark
31
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
61
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
33
October, 2019
29
August, 2017
20
June, 2019
19
September, 2020
13
July, 2019
7
August, 2020
February, 2021
6
November, 2017
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
237
bam
232
fastq
226
bigWig
106
bed narrowPeak
105
tsv
80
zippedFastqFolder
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
395
Homo sapiens
Biosample type
395
primary cell
53
cell line
24
in vitro differentiated cells
14
tissue
Organ
395
epithelium
340
pancreas
37
vasculature
36
connective tissue
36
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
9
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
249
AMP
146
HPAP
Genome assembly (visualization)
222
hg19
220
GRCh38
Lab
249
AMP-T2D consortium
146
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
December, 2019
February, 2021
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
395 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic alpha cell
13
52
35
12
25
1
pancreatic beta cell
13
21
23
12
16
1
pancreatic acinar cell
8
4
9
12
1
pancreatic ductal cell
13
4
4
10
endothelial cell of umbilical vein
17
2
2
1
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