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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
241
total RNA-seq
199
ATAC-seq
175
single cell RNA-seq
42
ChIP-seq
41
WGBS
31
DNase-seq
29
snATAC-seq
16
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
418
Transcription
260
DNA accessibility
52
DNA methylation
42
DNA binding
10
3D chromatin structure
Target of assay
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
88
February, 2023
88
May, 2021
59
September, 2020
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
36
June, 2019
31
July, 2019
21
August, 2017
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
398
bam
376
bigWig
291
fastq
258
tsv
153
zippedFastqFolder
78
bed narrowPeak
62
bigBed narrowPeak
33
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
798
Homo sapiens
Biosample type
1599
tissue
798
primary cell
526
cell line
254
in vitro differentiated cells
8
stem cell
Organ
329
epithelium
282
pancreas
28
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
8
blood
8
bodily fluid
7
vein
6
liver
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
398
AMP
279
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
390
hg19
331
GRCh38
Lab
393
AMP-T2D consortium
279
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
37
inconsistent ontology term
4
audit script error
month_released!
December, 2019
February, 2021
target.investigated_as!
histone
other post-translational modification
BIOSAMPLE
ASSAY
798 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
6
25
1
Langerhans cell
73
21
pancreatic beta cell
21
23
12
6
16
1
monocyte
54
15
1
1
exocrine cell
39
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