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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
241
total RNA-seq
161
ATAC-seq
154
single cell RNA-seq
30
DNase-seq
27
snATAC-seq
17
pCHi-C
10
Hi-C
9
RRBS
6
WGBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
396
Transcription
269
DNA binding
219
DNA accessibility
16
DNA methylation
10
3D chromatin structure
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
34
October, 2019
28
July, 2019
9
November, 2017
7
August, 2020
6
November, 2020
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
597
bigWig
591
bam
409
fastq
286
bed narrowPeak
263
tsv
100
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
19
zippedFastqFolder
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
927
Homo sapiens
Biosample type
2628
tissue
927
primary cell
601
cell line
392
in vitro differentiated cells
10
stem cell
Organ
321
epithelium
266
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
musculature of body
13
heart
9
liver
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
540
AMP
196
T1D
190
HPAP
1
ITG
Genome assembly (visualization)
611
hg19
520
GRCh38
Lab
505
AMP-T2D consortium
231
Kyle Gaulton, UCSD
190
Klaus Kaestner, Upenn
1
ITG
Audit category:
46
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
December, 2019
May, 2022
organ_slims!
blood
musculature of body
BIOSAMPLE
ASSAY
927 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
13
12
1
6
Langerhans cell
52
27
pancreatic beta cell
13
21
10
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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