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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
161
total RNA-seq
129
ATAC-seq
77
single cell RNA-seq
35
snATAC-seq
26
DNase-seq
17
pCHi-C
9
RRBS
4
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
240
Transcription
200
DNA binding
191
DNA accessibility
10
DNA methylation
4
3D chromatin structure
Target of assay
176
histone
176
histone modification
95
broad histone mark
81
narrow histone mark
17
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
May, 2022
51
February, 2023
50
June, 2019
42
February, 2021
40
September, 2020
34
October, 2019
24
July, 2019
18
August, 2017
11
July, 2018
10
April, 2018
8
January, 2021
6
November, 2020
December, 2019
5
May, 2019
4
August, 2021
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
396
bigWig
393
bam
216
bed narrowPeak
154
tsv
142
fastq
100
tagAlign
76
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
29
bed bed3+
19
zippedFastqFolder
9
bed bedMethyl
9
bigBed bedMethyl
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
hdf5
1
tar
Organism
662
Homo sapiens
Biosample type
1962
tissue
662
primary cell
570
cell line
389
in vitro differentiated cells
10
stem cell
Organ
321
epithelium
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
brain
14
musculature of body
13
heart
9
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
339
AMP
204
T1D
118
HPAP
1
ITG
Genome assembly (visualization)
417
hg19
325
GRCh38
Lab
304
AMP-T2D consortium
239
Kyle Gaulton, UCSD
118
Klaus Kaestner, Upenn
1
ITG
Audit category:
49
inconsistent ontology term
28
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
month_released!
December, 2019
May, 2022
organ_slims!
brain
pancreas
BIOSAMPLE
ASSAY
662 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
52
27
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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