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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
235
ChIP-seq
234
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
19
DNase-seq
17
pCHi-C
10
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
420
Transcription
276
DNA accessibility
235
DNA binding
55
DNA methylation
10
3D chromatin structure
Target of assay
227
histone
227
histone modification
117
broad histone mark
110
narrow histone mark
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
203
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
46
August, 2017
43
April, 2018
35
June, 2019
21
October, 2019
19
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
December, 2019
5
September, 2017
3
August, 2018
3
August, 2021
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
568
bigWig
542
bam
393
fastq
273
bed narrowPeak
254
tsv
153
zippedFastqFolder
98
tagAlign
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
27
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1013
Homo sapiens
Biosample type
2231
tissue
1013
primary cell
499
cell line
355
in vitro differentiated cells
9
stem cell
Organ
380
epithelium
334
pancreas
36
connective tissue
kidney
33
vasculature
28
blood vessel
20
vein
15
brain
12
musculature of body
11
heart
8
blood
8
bodily fluid
8
liver
4
eye
2
adipose tissue
artery
1
bone element
1
bone marrow
1
pericardium
Project
484
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
586
hg19
498
GRCh38
Lab
452
AMP-T2D consortium
324
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
1
ITG
Audit category:
43
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
December, 2019
organ_slims!
artery
kidney
target.investigated_as!
control
BIOSAMPLE
ASSAY
1013 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
7
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
7
21
23
12
16
1
exocrine cell
39
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