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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
74
single cell RNA-seq
70
ChIP-seq
32
ATAC-seq
6
WGBS
3
Hi-C
Assay category
155
Transcription
70
DNA binding
32
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Target of assay
58
histone
58
histone modification
31
narrow histone mark
27
broad histone mark
12
control
Date released
May, 2022
72
September, 2018
41
August, 2017
37
February, 2023
37
July, 2018
33
April, 2018
19
September, 2020
7
August, 2020
6
February, 2021
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
258
fastq
194
bam
192
bigWig
108
tsv
68
bed narrowPeak
22
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
266
Homo sapiens
Biosample type
473
tissue
266
primary cell
91
cell line
3
in vitro differentiated cells
Organ
326
epithelium
266
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
194
AMP
72
HPAP
Genome assembly (visualization)
192
GRCh38
185
hg19
Lab
194
AMP-T2D consortium
72
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
February, 2020
May, 2022
BIOSAMPLE
ASSAY
266 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
52
12
13
13
6
1
pancreatic beta cell
21
12
13
10
1
pancreatic ductal cell
4
10
13
4
pancreatic acinar cell
4
12
8
5
1
pancreatic endocrine cell
23
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