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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
241
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
48
snATAC-seq
47
WGBS
37
ChIP-seq
19
DNase-seq
17
pCHi-C
10
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
430
Transcription
268
DNA accessibility
55
DNA methylation
37
DNA binding
10
3D chromatin structure
Target of assay
227
histone
histone modification
117
broad histone mark
110
narrow histone mark
32
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
88
February, 2023
88
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
24
July, 2019
24
June, 2019
21
August, 2017
8
October, 2019
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
385
bam
365
bigWig
336
fastq
264
tsv
153
zippedFastqFolder
67
bed narrowPeak
50
bigBed narrowPeak
24
bed bed3+
23
bed broadPeak
23
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
817
Homo sapiens
Biosample type
1845
tissue
817
primary cell
545
cell line
282
in vitro differentiated cells
8
stem cell
Organ
340
epithelium
288
pancreas
31
connective tissue
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
380
AMP
324
HPAP
112
T1D
1
ITG
Genome assembly (visualization)
383
hg19
320
GRCh38
Lab
375
AMP-T2D consortium
324
Klaus Kaestner, Upenn
117
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
31
inconsistent ontology term
month_released!
February, 2020
organ_slims!
blood
kidney
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
817 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
31
6
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
16
6
1
monocyte
54
15
1
1
exocrine cell
39
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