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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
18
DNase-seq
15
total RNA-seq
4
RRBS
4
single cell RNA-seq
1
ATAC-seq
1
Hi-C
1
pCHi-C
1
small RNA-seq
Assay category
27
DNA binding
20
Transcription
19
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
15
July, 2019
11
October, 2019
6
November, 2020
5
May, 2019
February, 2021
2
April, 2018
2
July, 2018
1
May, 2021
Available data
64
bam
58
bigWig
38
bed narrowPeak
31
bigBed narrowPeak
20
tsv
17
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
3
fastq
1
hdf5
Organism
72
Homo sapiens
Biosample type
394
tissue
89
in vitro differentiated cells
72
primary cell
19
cell line
1
stem cell
Organ
400
epithelium
340
pancreas
37
vasculature
36
connective tissue
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
71
AMP
1
T1D
Genome assembly (visualization)
58
GRCh38
56
hg19
Lab
71
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
21
inconsistent ontology term
month_released!
February, 2021
BIOSAMPLE
ASSAY
72 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
single cell RNA-seq
ATAC-seq
Hi-C
pCHi-C
small RNA-seq
primary cell
epithelial cell of proximal tubule
10
1
1
1
cardiac fibroblast
5
3
1
kidney epithelial cell
5
1
1
1
mesenchymal stem cell
7
osteoblast
1
4
1
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