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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
225
ChIP-seq
188
ATAC-seq
169
total RNA-seq
139
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
9
RRBS
6
Hi-C
5
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
310
Transcription
249
DNA accessibility
225
DNA binding
57
DNA methylation
6
3D chromatin structure
Target of assay
201
histone
201
histone modification
105
broad histone mark
96
narrow histone mark
23
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
June, 2019
48
February, 2021
July, 2018
43
April, 2018
26
July, 2019
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
493
bigWig
478
bam
279
fastq
231
bed narrowPeak
208
tsv
153
zippedFastqFolder
100
tagAlign
45
bigBed narrowPeak
17
bed broadPeak
17
bigBed broadPeak
9
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
864
Homo sapiens
Biosample type
2304
tissue
864
primary cell
590
cell line
378
in vitro differentiated cells
10
stem cell
Organ
316
epithelium
272
pancreas
vasculature
29
blood vessel
23
kidney
22
vein
20
connective tissue
16
brain
12
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
411
AMP
248
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
512
hg19
423
GRCh38
Lab
376
AMP-T2D consortium
248
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
17
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
February, 2023
July, 2018
June, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
864 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
primary cell
monocyte
85
15
54
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
35
25
5
31
1
pancreatic beta cell
13
23
11
3
16
1
CD8-positive, alpha-beta T cell
33
2
4
1
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