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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
224
ChIP-seq
Assay category
224
DNA binding
Target of assay
224
histone
224
histone modification
117
broad histone mark
107
narrow histone mark
29
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
118
May, 2021
38
August, 2017
32
September, 2018
18
June, 2019
15
October, 2019
3
August, 2021
November, 2017
Available data
217
bigWig
203
bed narrowPeak
190
bam
98
tagAlign
70
fastq
40
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
3
bed bed3+
Organism
224
Homo sapiens
Biosample type
537
tissue
224
primary cell
112
in vitro differentiated cells
23
cell line
2
stem cell
Organ
64
epithelium
58
pancreas
15
blood vessel
15
vasculature
15
vein
kidney
8
connective tissue
8
musculature of body
3
liver
2
heart
1
eye
Project
140
AMP
84
T1D
Genome assembly (visualization)
217
hg19
185
GRCh38
Lab
114
Kyle Gaulton, UCSD
110
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
February, 2023
November, 2017
organ_slims!
kidney
BIOSAMPLE
ASSAY
224 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
30
pancreatic endocrine cell
23
endothelial cell of umbilical vein
15
pancreatic ductal cell
13
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