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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
227
ChIP-seq
Assay category
227
DNA binding
Target of assay
227
histone
227
histone modification
117
broad histone mark
110
narrow histone mark
32
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
118
May, 2021
38
August, 2017
32
September, 2018
18
June, 2019
15
October, 2019
3
August, 2021
3
November, 2017
Available data
220
bigWig
206
bed narrowPeak
193
bam
98
tagAlign
73
fastq
43
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
3
bed bed3+
Organism
227
Homo sapiens
Biosample type
559
tissue
227
primary cell
112
in vitro differentiated cells
38
cell line
2
stem cell
Organ
66
epithelium
58
pancreas
17
vasculature
16
blood vessel
15
vein
kidney
8
connective tissue
8
musculature of body
3
brain
3
liver
2
heart
1
eye
Project
143
AMP
84
T1D
Genome assembly (visualization)
220
hg19
188
GRCh38
Lab
114
Kyle Gaulton, UCSD
113
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
January, 2021
organ_slims!
kidney
limb
BIOSAMPLE
ASSAY
227 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
30
pancreatic endocrine cell
23
endothelial cell of umbilical vein
15
pancreatic ductal cell
13
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