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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
81
ChIP-seq
72
ATAC-seq
47
WGBS
37
single cell RNA-seq
7
Hi-C
6
RRBS
4
DNase-seq
1
FAIRE-seq
Assay category
130
Transcription
81
DNA binding
77
DNA accessibility
53
DNA methylation
7
3D chromatin structure
Target of assay
61
histone
61
histone modification
32
narrow histone mark
29
broad histone mark
18
control
2
RNA binding protein
2
transcription factor
Date released
80
May, 2022
61
September, 2018
37
February, 2023
33
April, 2018
July, 2018
33
October, 2019
29
August, 2017
June, 2019
19
September, 2020
13
July, 2019
7
August, 2020
6
February, 2021
6
November, 2017
5
December, 2019
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
205
fastq
184
bam
176
bigWig
84
bed narrowPeak
83
tsv
80
zippedFastqFolder
39
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
7
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
348
Homo sapiens
Biosample type
348
primary cell
79
cell line
24
in vitro differentiated cells
15
tissue
Organ
348
epithelium
309
pancreas
33
vasculature
29
blood vessel
22
vein
20
connective tissue
18
kidney
16
brain
12
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
196
AMP
152
HPAP
Genome assembly (visualization)
178
hg19
170
GRCh38
Lab
196
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
4
audit script error
2
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
July, 2018
June, 2019
May, 2019
BIOSAMPLE
ASSAY
348 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
Hi-C
RRBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
52
13
35
31
5
1
pancreatic beta cell
21
13
23
16
3
1
pancreatic acinar cell
4
8
9
7
1
pancreatic ductal cell
4
13
4
7
endothelial cell of umbilical vein
17
2
2
1
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