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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
240
total RNA-seq
199
ATAC-seq
149
ChIP-seq
139
single cell RNA-seq
56
snATAC-seq
47
WGBS
25
DNase-seq
17
pCHi-C
9
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
381
Transcription
280
DNA accessibility
149
DNA binding
57
DNA methylation
6
3D chromatin structure
Target of assay
218
histone
218
histone modification
112
broad histone mark
narrow histone mark
31
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
58
September, 2018
48
February, 2021
July, 2018
43
April, 2018
40
June, 2019
37
August, 2017
26
July, 2019
9
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
428
bam
427
bigWig
319
fastq
215
tsv
176
bed narrowPeak
153
zippedFastqFolder
70
bigBed narrowPeak
51
tagAlign
32
bed broadPeak
32
bigBed broadPeak
26
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
890
Homo sapiens
Biosample type
1901
tissue
890
primary cell
329
in vitro differentiated cells
185
cell line
9
stem cell
Organ
338
epithelium
278
pancreas
33
connective tissue
31
kidney
29
vasculature
blood vessel
18
brain
16
vein
liver
11
heart
10
musculature of body
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
401
AMP
324
HPAP
164
T1D
1
ITG
Genome assembly (visualization)
439
hg19
365
GRCh38
Lab
376
AMP-T2D consortium
324
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
1
ITG
Audit category:
38
inconsistent ontology term
30
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
July, 2018
organ_slims!
blood vessel
liver
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
890 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
9
5
31
1
monocyte
54
15
44
1
1
pancreatic beta cell
21
23
9
3
16
1
exocrine cell
39
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