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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
total RNA-seq
128
ATAC-seq
115
single cell RNA-seq
56
snATAC-seq
17
pCHi-C
16
ChIP-seq
13
DNase-seq
4
RRBS
3
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
271
Transcription
197
DNA accessibility
16
DNA binding
5
DNA methylation
3
3D chromatin structure
Target of assay
histone
171
histone modification
91
broad histone mark
80
narrow histone mark
14
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
88
May, 2021
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
18
July, 2019
18
June, 2019
15
July, 2018
10
April, 2018
8
January, 2021
6
August, 2017
6
November, 2020
June, 2018
2
November, 2017
1
March, 2023
1
November, 2018
1
October, 2019
1
September, 2018
Available data
228
bam
213
bigWig
152
tsv
133
fastq
73
zippedFastqFolder
34
bed narrowPeak
18
bigBed narrowPeak
16
bed bed3+
15
bed broadPeak
15
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
1
tagAlign
Organism
509
Homo sapiens
Biosample type
2135
tissue
557
cell line
509
primary cell
273
in vitro differentiated cells
8
stem cell
Organ
epithelium
287
pancreas
31
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
216
AMP
172
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
232
hg19
172
GRCh38
Lab
211
AMP-T2D consortium
172
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
28
inconsistent ontology term
27
audit script error
month_released!
June, 2018
organ_slims!
epithelium
target.investigated_as!
histone
BIOSAMPLE
ASSAY
509 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
ChIP-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
monocyte
54
15
1
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
1
CD4-positive, alpha-beta memory T cell
22
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