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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
248
ChIP-seq
246
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
7
DNase-seq
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
434
Transcription
264
DNA accessibility
248
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
218
histone
218
histone modification
114
broad histone mark
104
narrow histone mark
27
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
29
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
564
bigWig
552
bam
409
fastq
268
tsv
248
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
13
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1031
Homo sapiens
Biosample type
2122
tissue
1031
primary cell
660
cell line
393
in vitro differentiated cells
10
stem cell
Organ
386
epithelium
346
pancreas
33
vasculature
29
blood vessel
23
kidney
22
connective tissue
22
vein
16
brain
12
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
502
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
586
hg19
487
GRCh38
Lab
467
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
29
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
June, 2019
organ_slims!
adipose tissue
thymus
target.investigated_as!
other context
BIOSAMPLE
ASSAY
1031 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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