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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
236
total RNA-seq
232
ChIP-seq
199
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
9
Hi-C
6
RRBS
5
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
425
Transcription
261
DNA accessibility
232
DNA binding
54
DNA methylation
9
3D chromatin structure
Target of assay
206
histone
206
histone modification
108
broad histone mark
98
narrow histone mark
24
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
June, 2019
22
July, 2019
22
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
541
bigWig
526
bam
409
fastq
259
tsv
234
bed narrowPeak
153
zippedFastqFolder
96
tagAlign
58
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
9
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
998
Homo sapiens
Biosample type
2021
tissue
998
primary cell
379
in vitro differentiated cells
242
cell line
10
stem cell
Organ
386
epithelium
346
pancreas
33
vasculature
29
blood vessel
kidney
22
connective tissue
22
vein
16
brain
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
469
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
558
hg19
464
GRCh38
Lab
434
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
24
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
June, 2019
organ_slims!
kidney
liver
lymph node
BIOSAMPLE
ASSAY
998 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
21
13
23
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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