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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
166
ChIP-seq
160
total RNA-seq
129
ATAC-seq
113
single cell RNA-seq
56
snATAC-seq
17
pCHi-C
7
Hi-C
7
RRBS
5
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
275
Transcription
191
DNA accessibility
166
DNA binding
8
DNA methylation
7
3D chromatin structure
Target of assay
151
histone
151
histone modification
82
broad histone mark
69
narrow histone mark
13
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
42
February, 2021
June, 2019
40
September, 2020
24
July, 2019
23
October, 2019
18
August, 2017
11
July, 2018
10
April, 2018
9
November, 2017
8
January, 2021
6
November, 2020
5
December, 2019
4
August, 2021
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
358
bigWig
342
bam
170
bed narrowPeak
156
tsv
151
fastq
100
tagAlign
73
zippedFastqFolder
36
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
13
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
664
Homo sapiens
Biosample type
1880
tissue
664
primary cell
548
cell line
391
in vitro differentiated cells
8
stem cell
Organ
386
epithelium
pancreas
33
vasculature
29
blood vessel
kidney
22
connective tissue
22
vein
16
brain
12
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
287
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
384
hg19
281
GRCh38
Lab
252
AMP-T2D consortium
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
28
audit script error
20
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
month_released!
June, 2019
organ_slims!
kidney
pancreas
BIOSAMPLE
ASSAY
664 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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