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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
86
ChIP-seq
72
ATAC-seq
70
single cell RNA-seq
47
WGBS
7
Hi-C
6
RRBS
4
DNase-seq
1
FAIRE-seq
Assay category
163
Transcription
86
DNA binding
77
DNA accessibility
53
DNA methylation
7
3D chromatin structure
Target of assay
64
histone
64
histone modification
33
narrow histone mark
31
broad histone mark
19
control
3
RNA binding protein
3
transcription factor
Date released
80
May, 2022
61
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
33
October, 2019
29
August, 2017
June, 2019
19
September, 2020
13
July, 2019
7
August, 2020
6
February, 2021
6
November, 2017
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
238
fastq
222
bam
213
bigWig
116
tsv
88
bed narrowPeak
80
zippedFastqFolder
43
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
7
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
386
Homo sapiens
Biosample type
386
primary cell
79
cell line
58
tissue
24
in vitro differentiated cells
Organ
386
epithelium
346
pancreas
33
vasculature
29
blood vessel
23
kidney
22
connective tissue
22
vein
16
brain
12
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
0
nerve
Project
234
AMP
152
HPAP
Genome assembly (visualization)
215
hg19
207
GRCh38
Lab
234
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
June, 2019
organ_slims!
lung
BIOSAMPLE
ASSAY
386 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
Hi-C
RRBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
52
13
35
12
31
1
pancreatic beta cell
21
13
23
12
16
1
pancreatic acinar cell
4
8
9
12
1
pancreatic ductal cell
4
13
4
10
endothelial cell of umbilical vein
17
2
2
1
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