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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
12
DNase-seq
6
total RNA-seq
3
RRBS
Assay category
13
DNA binding
12
DNA accessibility
6
Transcription
3
DNA methylation
Target of assay
10
histone
10
histone modification
5
broad histone mark
5
narrow histone mark
3
control
2
RNA binding protein
transcription factor
Date released
12
June, 2019
11
October, 2019
7
July, 2019
4
May, 2019
Available data
29
bam
26
bigWig
20
bed narrowPeak
14
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
34
Homo sapiens
Biosample type
299
tissue
34
primary cell
10
cell line
Organ
400
epithelium
346
pancreas
38
connective tissue
34
kidney
34
vasculature
29
blood vessel
21
vein
18
brain
14
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
0
skin of body
Project
34
AMP
Genome assembly (visualization)
26
GRCh38
23
hg19
Lab
34
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
month_released!
March, 2020
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
primary cell
epithelial cell of proximal tubule
9
1
1
1
kidney epithelial cell
4
1
1
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
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