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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
259
ChIP-seq
242
total RNA-seq
199
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
24
DNase-seq
17
pCHi-C
8
RRBS
5
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
428
Transcription
280
DNA accessibility
259
DNA binding
56
DNA methylation
5
3D chromatin structure
Target of assay
231
histone
231
histone modification
121
broad histone mark
110
narrow histone mark
28
control
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
33
October, 2019
22
July, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
March, 2023
1
November, 2018
Available data
575
bigWig
573
bam
398
fastq
271
bed narrowPeak
262
tsv
153
zippedFastqFolder
96
tagAlign
89
bigBed narrowPeak
34
bed broadPeak
34
bigBed broadPeak
23
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
tar
Organism
1045
Homo sapiens
Biosample type
2125
tissue
1045
primary cell
370
in vitro differentiated cells
248
cell line
8
stem cell
Organ
401
epithelium
346
pancreas
38
connective tissue
35
vasculature
34
kidney
30
blood vessel
22
vein
brain
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
517
AMP
324
HPAP
204
T1D
Genome assembly (visualization)
587
hg19
504
GRCh38
Lab
482
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
50
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
March, 2023
organ_slims!
brain
liver
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
1045 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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