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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
total RNA-seq
198
ATAC-seq
183
single cell RNA-seq
56
snATAC-seq
47
WGBS
36
ChIP-seq
25
DNase-seq
15
pCHi-C
9
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
421
Transcription
280
DNA accessibility
57
DNA methylation
36
DNA binding
9
3D chromatin structure
Target of assay
226
histone
histone modification
116
broad histone mark
110
narrow histone mark
31
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
88
February, 2023
87
May, 2021
59
September, 2020
46
July, 2018
45
February, 2021
41
April, 2018
41
September, 2018
27
June, 2019
23
July, 2019
21
August, 2017
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
376
bam
358
bigWig
333
fastq
255
tsv
153
zippedFastqFolder
69
bed narrowPeak
54
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
26
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
2
tagAlign
1
tar
Organism
818
Homo sapiens
Biosample type
1609
tissue
818
primary cell
624
cell line
222
in vitro differentiated cells
7
stem cell
Organ
338
epithelium
288
pancreas
connective tissue
24
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
374
AMP
324
HPAP
119
T1D
1
ITG
Genome assembly (visualization)
371
hg19
313
GRCh38
Lab
369
AMP-T2D consortium
324
Klaus Kaestner, Upenn
124
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
30
inconsistent ontology term
month_released!
May, 2019
organ_slims!
connective tissue
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
818 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
pancreatic alpha cell
52
35
12
31
6
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
16
6
1
monocyte
54
15
1
1
exocrine cell
39
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