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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
248
ChIP-seq
238
total RNA-seq
159
ATAC-seq
154
single cell RNA-seq
35
snATAC-seq
23
DNase-seq
17
pCHi-C
9
RRBS
6
Hi-C
6
WGBS
2
small RNA-seq
1
DNAme array
Assay category
394
Transcription
248
DNA binding
217
DNA accessibility
16
DNA methylation
6
3D chromatin structure
Target of assay
212
histone
212
histone modification
109
broad histone mark
103
narrow histone mark
30
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
51
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
26
July, 2019
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
571
bigWig
560
bam
406
fastq
265
bed narrowPeak
261
tsv
96
tagAlign
90
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
26
bed bed3+
19
zippedFastqFolder
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
898
Homo sapiens
Biosample type
2047
tissue
898
primary cell
371
in vitro differentiated cells
165
cell line
10
stem cell
Organ
293
epithelium
266
pancreas
39
connective tissue
25
kidney
21
brain
16
vasculature
14
musculature of body
13
heart
liver
blood vessel
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
503
AMP
204
T1D
190
HPAP
1
ITG
Genome assembly (visualization)
582
hg19
498
GRCh38
Lab
468
AMP-T2D consortium
239
Kyle Gaulton, UCSD
190
Klaus Kaestner, Upenn
1
ITG
Audit category:
52
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2022
October, 2019
organ_slims!
blood vessel
liver
BIOSAMPLE
ASSAY
898 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
WGBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
13
12
1
6
Langerhans cell
52
27
pancreatic beta cell
13
21
10
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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