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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
ChIP-seq
162
total RNA-seq
128
ATAC-seq
113
single cell RNA-seq
56
snATAC-seq
28
DNase-seq
17
pCHi-C
10
RRBS
5
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
277
Transcription
212
DNA accessibility
192
DNA binding
11
DNA methylation
5
3D chromatin structure
Target of assay
164
histone
164
histone modification
86
broad histone mark
78
narrow histone mark
21
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
55
June, 2019
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
31
July, 2019
18
August, 2017
13
October, 2019
11
July, 2018
10
April, 2018
9
November, 2017
8
January, 2021
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
2
June, 2018
1
March, 2023
1
November, 2018
1
September, 2018
Available data
401
bigWig
389
bam
212
bed narrowPeak
158
tsv
151
fastq
100
tagAlign
73
bigBed narrowPeak
73
zippedFastqFolder
44
bed broadPeak
44
bigBed broadPeak
34
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
1
bed bed3
1
hic
Organism
714
Homo sapiens
Biosample type
2272
tissue
714
primary cell
570
cell line
391
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
pancreas
37
vasculature
36
kidney
33
connective tissue
31
blood vessel
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
337
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
420
hg19
326
GRCh38
Lab
302
AMP-T2D consortium
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
49
inconsistent ontology term
27
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
month_released!
November, 2020
organ_slims!
pancreas
vein
organ_slims!!
pancreas
BIOSAMPLE
ASSAY
714 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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