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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
total RNA-seq
5
DNase-seq
4
single cell RNA-seq
2
pCHi-C
1
ATAC-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
12
DNA binding
11
Transcription
6
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
17
June, 2019
8
July, 2019
November, 2020
3
February, 2021
2
April, 2018
2
July, 2018
1
May, 2021
Available data
30
bam
27
bigWig
15
bed narrowPeak
14
bigBed narrowPeak
11
tsv
7
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
33
Homo sapiens
Biosample type
547
tissue
97
in vitro differentiated cells
33
primary cell
1
stem cell
Organ
406
epithelium
346
pancreas
37
vasculature
36
kidney
33
connective tissue
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
32
AMP
1
T1D
Genome assembly (visualization)
28
hg19
26
GRCh38
Lab
32
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
month_released!
November, 2020
organ_slims!
blood vessel
mammary gland
BIOSAMPLE
ASSAY
33 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
pCHi-C
ATAC-seq
Hi-C
RRBS
small RNA-seq
primary cell
cardiac fibroblast
5
3
1
mesenchymal stem cell
7
pancreatic stellate cell
4
osteoblast
1
1
1
brain pericyte
1
1
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