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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
ChIP-seq
245
total RNA-seq
198
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
22
DNase-seq
16
pCHi-C
9
RRBS
5
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
431
Transcription
276
DNA accessibility
246
DNA binding
57
DNA methylation
5
3D chromatin structure
Target of assay
213
histone
213
histone modification
110
broad histone mark
103
narrow histone mark
26
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
50
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
24
July, 2019
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
570
bigWig
561
bam
400
fastq
265
tsv
263
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
85
bigBed narrowPeak
34
bed broadPeak
34
bigBed broadPeak
27
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
Organism
1031
Homo sapiens
Biosample type
2356
tissue
1031
primary cell
632
cell line
386
in vitro differentiated cells
10
stem cell
Organ
373
epithelium
346
pancreas
39
connective tissue
25
kidney
brain
16
vasculature
14
musculature of body
13
heart
13
liver
10
blood vessel
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
bone marrow
1
pericardium
vein
Project
503
AMP
324
HPAP
203
T1D
1
ITG
Genome assembly (visualization)
580
hg19
500
GRCh38
Lab
468
AMP-T2D consortium
324
Klaus Kaestner, Upenn
238
Kyle Gaulton, UCSD
1
ITG
Audit category:
52
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
October, 2019
organ_slims!
bone marrow
brain
vein
BIOSAMPLE
ASSAY
1031 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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