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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
252
ChIP-seq
244
total RNA-seq
198
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
26
DNase-seq
17
pCHi-C
9
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
Assay category
433
Transcription
280
DNA accessibility
252
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
215
histone
215
histone modification
110
broad histone mark
105
narrow histone mark
31
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
51
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
October, 2019
29
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
586
bigWig
573
bam
409
fastq
271
bed narrowPeak
267
tsv
153
zippedFastqFolder
100
tagAlign
93
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
34
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
1048
Homo sapiens
Biosample type
2499
tissue
1048
primary cell
631
cell line
386
in vitro differentiated cells
10
stem cell
Organ
373
epithelium
346
pancreas
39
connective tissue
25
kidney
21
brain
16
vasculature
14
musculature of body
13
heart
13
liver
10
blood vessel
8
blood
8
bodily fluid
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
pericardium
1
vein
Project
519
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
597
hg19
510
GRCh38
Lab
484
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
52
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
October, 2019
organ_slims!
eye
mammary gland
pericardium
BIOSAMPLE
ASSAY
1048 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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