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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
11
total RNA-seq
8
DNase-seq
4
Hi-C
4
single cell RNA-seq
2
ATAC-seq
2
pCHi-C
1
RRBS
Assay category
15
DNA binding
15
Transcription
10
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
9
histone
9
histone modification
5
narrow histone mark
4
broad histone mark
4
control
2
RNA binding protein
2
transcription factor
Date released
October, 2019
19
June, 2019
10
July, 2019
6
November, 2020
3
February, 2021
3
November, 2017
2
April, 2018
2
July, 2018
1
March, 2020
1
May, 2021
Available data
41
bam
39
bigWig
21
bed narrowPeak
19
bigBed narrowPeak
15
tsv
12
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
6
fastq
3
hdf5
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
47
Homo sapiens
Biosample type
165
tissue
94
in vitro differentiated cells
66
cell line
47
primary cell
1
stem cell
Organ
373
epithelium
346
pancreas
39
connective tissue
25
kidney
21
brain
16
vasculature
14
musculature of body
13
heart
13
liver
10
blood vessel
8
blood
8
bodily fluid
5
eye
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
46
AMP
1
T1D
Genome assembly (visualization)
41
hg19
36
GRCh38
Lab
46
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
month_released!
October, 2019
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
single cell RNA-seq
ATAC-seq
pCHi-C
RRBS
primary cell
cardiac fibroblast
5
3
1
osteoblast
5
1
2
1
mesenchymal stem cell
7
brain microvascular endothelial cell
3
1
1
pancreatic stellate cell
4
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