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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
230
total RNA-seq
197
ATAC-seq
147
single cell RNA-seq
56
snATAC-seq
47
WGBS
41
ChIP-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
378
Transcription
285
DNA accessibility
58
DNA methylation
41
DNA binding
10
3D chromatin structure
Target of assay
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
88
February, 2023
88
May, 2021
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
36
June, 2019
29
July, 2019
20
August, 2017
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
403
bam
377
bigWig
294
fastq
268
tsv
134
zippedFastqFolder
78
bed narrowPeak
61
bigBed narrowPeak
34
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
789
Homo sapiens
Biosample type
1692
tissue
789
primary cell
594
cell line
278
in vitro differentiated cells
8
stem cell
Organ
321
epithelium
269
pancreas
31
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
403
AMP
265
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
395
hg19
332
GRCh38
Lab
398
AMP-T2D consortium
265
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
37
inconsistent ontology term
31
audit script error
month_released!
September, 2020
organ_slims!
adipose tissue
target.investigated_as!
chromatin remodeller
histone
BIOSAMPLE
ASSAY
789 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
pancreatic alpha cell
37
33
12
31
6
1
Langerhans cell
45
48
pancreatic beta cell
20
22
12
16
6
1
monocyte
54
15
1
1
exocrine cell
39
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