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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
231
total RNA-seq
197
ATAC-seq
147
single cell RNA-seq
56
snATAC-seq
47
WGBS
30
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
380
Transcription
284
DNA accessibility
267
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
236
histone
236
histone modification
122
broad histone mark
114
narrow histone mark
34
control
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
September, 2020
57
August, 2017
48
February, 2021
48
July, 2018
48
June, 2019
43
April, 2018
34
October, 2019
30
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
598
bigWig
596
bam
363
fastq
283
bed narrowPeak
270
tsv
134
zippedFastqFolder
100
tagAlign
97
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
36
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1015
Homo sapiens
Biosample type
2693
tissue
1015
primary cell
597
cell line
383
in vitro differentiated cells
10
stem cell
Organ
382
epithelium
327
pancreas
38
connective tissue
35
vasculature
34
kidney
30
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
545
AMP
265
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
615
hg19
522
GRCh38
Lab
510
AMP-T2D consortium
265
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
September, 2020
organ_slims!
eye
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
1015 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
37
33
12
31
1
Langerhans cell
45
48
pancreatic beta cell
13
20
22
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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