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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
265
ChIP-seq
227
total RNA-seq
197
ATAC-seq
147
single cell RNA-seq
56
snATAC-seq
47
WGBS
28
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
376
Transcription
282
DNA accessibility
265
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
235
histone
235
histone modification
122
broad histone mark
113
narrow histone mark
33
control
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
September, 2020
57
August, 2017
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
34
October, 2019
26
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
591
bigWig
588
bam
363
fastq
280
bed narrowPeak
266
tsv
134
zippedFastqFolder
100
tagAlign
94
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
34
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1007
Homo sapiens
Biosample type
2446
tissue
1007
primary cell
531
cell line
382
in vitro differentiated cells
10
stem cell
Organ
382
epithelium
327
pancreas
38
connective tissue
35
vasculature
34
kidney
30
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
537
AMP
265
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
609
hg19
515
GRCh38
Lab
502
AMP-T2D consortium
265
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
September, 2020
organ_slims!
heart
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
1007 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
37
33
12
31
1
Langerhans cell
45
48
pancreatic beta cell
13
20
22
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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