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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
single cell RNA-seq
70
ChIP-seq
68
ATAC-seq
65
total RNA-seq
47
WGBS
3
Hi-C
Assay category
139
Transcription
70
DNA binding
68
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Target of assay
58
histone
58
histone modification
31
narrow histone mark
27
broad histone mark
12
control
Date released
80
May, 2022
72
September, 2018
41
August, 2017
37
February, 2023
37
July, 2018
33
April, 2018
September, 2020
7
August, 2020
6
February, 2021
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
239
fastq
194
bam
189
bigWig
108
tsv
80
zippedFastqFolder
68
bed narrowPeak
22
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
327
Homo sapiens
Biosample type
497
tissue
327
primary cell
91
cell line
3
in vitro differentiated cells
Organ
382
epithelium
327
pancreas
38
connective tissue
35
vasculature
34
kidney
30
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
194
AMP
133
HPAP
Genome assembly (visualization)
189
GRCh38
185
hg19
Lab
194
AMP-T2D consortium
133
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
September, 2020
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
327 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
12
13
33
37
31
1
pancreatic beta cell
12
13
22
20
16
1
pancreatic acinar cell
12
8
9
4
1
pancreatic ductal cell
10
13
4
4
pancreatic endocrine cell
23
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