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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
11
total RNA-seq
10
RRBS
3
ATAC-seq
3
single cell RNA-seq
2
DNase-seq
2
Hi-C
2
small RNA-seq
Assay category
53
DNA binding
16
Transcription
10
DNA methylation
5
DNA accessibility
2
3D chromatin structure
Target of assay
38
histone
38
histone modification
22
narrow histone mark
16
broad histone mark
16
control
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
53
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
27
July, 2019
13
October, 2019
8
January, 2021
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
74
bam
64
bigWig
58
fastq
33
bed narrowPeak
19
bigBed narrowPeak
16
tsv
14
bed broadPeak
14
bigBed broadPeak
12
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
2
bed bed3+
2
hdf5
Organism
86
Homo sapiens
Biosample type
354
tissue
86
primary cell
68
in vitro differentiated cells
Organ
42
epithelium
41
pancreas
8
connective tissue
7
brain
7
kidney
5
heart
5
vasculature
blood vessel
3
musculature of body
2
adipose tissue
2
artery
2
liver
1
eye
1
pericardium
Project
86
AMP
Genome assembly (visualization)
74
hg19
58
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
August, 2020
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
total RNA-seq
RRBS
ATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
small RNA-seq
primary cell
skeletal muscle myoblast
15
1
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
cerebellar granule cell
2
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