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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
15
total RNA-seq
10
RRBS
6
DNase-seq
5
ATAC-seq
5
Hi-C
3
single cell RNA-seq
2
small RNA-seq
1
FAIRE-seq
Assay category
77
DNA binding
20
Transcription
12
DNA accessibility
10
DNA methylation
5
3D chromatin structure
Target of assay
59
histone
59
histone modification
31
narrow histone mark
28
broad histone mark
19
control
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
107
bam
91
bigWig
58
fastq
54
bed narrowPeak
32
bigBed narrowPeak
20
tsv
18
bed broadPeak
18
bigBed broadPeak
12
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
bed bed3+
4
hdf5
1
hic
1
tar
Organism
124
Homo sapiens
Biosample type
603
tissue
124
primary cell
76
in vitro differentiated cells
30
cell line
Organ
75
epithelium
41
pancreas
26
vasculature
25
blood vessel
21
vein
18
kidney
8
connective tissue
7
brain
5
heart
3
liver
3
musculature of body
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
124
AMP
Genome assembly (visualization)
104
hg19
82
GRCh38
Lab
124
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
January, 2021
BIOSAMPLE
ASSAY
124 results
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ChIP-seq
total RNA-seq
RRBS
DNase-seq
ATAC-seq
Hi-C
single cell RNA-seq
small RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
1
1
skeletal muscle myoblast
15
1
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
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